STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE28288.1Choline-sulfatase. (956 aa)    
Predicted Functional Partners:
SEE28326.1
D-threo-aldose 1-dehydrogenase.
  
    0.775
SEE28199.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
       0.773
SEE28253.1
Raffinose/stachyose/melibiose transport system permease protein.
       0.773
SEE28369.1
L-fuconolactonase.
       0.773
SEE28160.1
Multiple sugar transport system substrate-binding protein.
       0.450
SED72962.1
Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain.
  
   0.446
SEE28089.1
Hyaluronate lyase.
       0.445
SEE28119.1
Hypothetical protein.
       0.445
SEE21487.1
Sulfatase-modifying factor enzyme 1.
    
   0.418
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.402
Your Current Organism:
Haloactinobacterium album
NCBI taxonomy Id: 648782
Other names: Bogoriellaceae bacterium YIM 93306, CCTCC AB 208069, DSM 21368, H. album, Haloactinobacterium album Tang et al. 2010, KCTC 19413, YIM 93306
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.