STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE67776.1Muconate cycloisomerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (384 aa)    
Predicted Functional Partners:
SEE67823.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
    
  0.790
SEE67805.1
3-oxoacyl-[acyl-carrier protein] reductase.
    
  0.782
SED53214.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.774
SEE67752.1
DNA-binding transcriptional regulator, GntR family.
  
    0.774
SEE83608.1
L-alanine-DL-glutamate epimerase.
  
     0.774
SEE67844.1
Phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.773
SED96209.1
D-galactarolactone cycloisomerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.769
SEE84674.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.768
SEE67867.1
Right handed beta helix region.
       0.678
SEE23378.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.674
Your Current Organism:
Haloactinobacterium album
NCBI taxonomy Id: 648782
Other names: Bogoriellaceae bacterium YIM 93306, CCTCC AB 208069, DSM 21368, H. album, Haloactinobacterium album Tang et al. 2010, KCTC 19413, YIM 93306
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