STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE97527.1Transcriptional regulator, LacI family. (347 aa)    
Predicted Functional Partners:
SEE97538.1
Arylsulfatase.
       0.773
SEE86955.1
Regulatory protein, lacI family.
  
     0.762
SEE15981.1
Glutamate synthase (NADH) large subunit.
    
 
 0.728
SED53961.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
  
 
   0.626
SED53918.1
L-rhamnose isomerase / sugar isomerase.
  
     0.556
SED54000.1
Rhamnulokinase.
  
 
   0.474
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the GTP cyclohydrolase II family.
    
   0.468
SED83117.1
Phosphocarrier protein HPr /dihydroxyacetone kinase DhaM subunit.
    
   0.446
SEE80692.1
Phosphocarrier protein.
    
   0.446
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.443
Your Current Organism:
Haloactinobacterium album
NCBI taxonomy Id: 648782
Other names: Bogoriellaceae bacterium YIM 93306, CCTCC AB 208069, DSM 21368, H. album, Haloactinobacterium album Tang et al. 2010, KCTC 19413, YIM 93306
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.