STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF01088.1Putative adhesin. (276 aa)    
Predicted Functional Partners:
SEF01066.1
Hypothetical protein.
 
     0.950
SEF01078.1
Hypothetical protein.
       0.773
SEE18217.1
Pentapeptide repeat-containing protein; Manually curated.
  
 
   0.683
SED65545.1
Signal transduction histidine kinase.
  
  
 0.670
SED87096.1
LysM domain-containing protein.
    
   0.634
SEE02861.1
LysM domain-containing protein.
    
   0.634
SEE32454.1
Uncharacterized protein YjbI, contains pentapeptide repeats.
    
   0.634
SEE97560.1
Hypothetical protein.
    
   0.634
SEE98424.1
Hypothetical protein.
    
   0.634
SEE99213.1
Protein of unknown function.
  
 
   0.607
Your Current Organism:
Haloactinobacterium album
NCBI taxonomy Id: 648782
Other names: Bogoriellaceae bacterium YIM 93306, CCTCC AB 208069, DSM 21368, H. album, Haloactinobacterium album Tang et al. 2010, KCTC 19413, YIM 93306
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.