STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000820045_00619Unannotated protein. (555 aa)    
Predicted Functional Partners:
GCA_000820045_02553
Unannotated protein.
 
 
 0.950
GCA_000820045_02951
Unannotated protein.
 
  
 
0.946
GCA_000820045_04182
Unannotated protein.
 
 
0.943
GCA_000820045_03028
Unannotated protein.
 
  
  0.942
GCA_000820045_00274
Unannotated protein.
    
 0.941
GCA_000820045_01858
Unannotated protein.
 
  
 0.941
GCA_000820045_00273
Unannotated protein.
    
 0.939
GCA_000820045_01752
Unannotated protein.
    
 0.937
GCA_000820045_01856
Unannotated protein.
 
  
  0.936
GCA_000820045_02647
Unannotated protein.
  
 
  0.936
Your Current Organism:
Aeromonas rivuli
NCBI taxonomy Id: 648794
Other names: A. rivuli, Aeromonas rivuli Figueras et al. 2011, Aeromonas sp. MDC2511, Aeromonas sp. MDC2512, Aeromonas sp. WB4.1-19, Aeromonas sp. WB4.4-101, CECT 7518, DSM 22539, MDC 2511, WB 4.1-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.