STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000820045_02970Unannotated protein. (408 aa)    
Predicted Functional Partners:
GCA_000820045_02971
Unannotated protein.
     
 0.761
GCA_000820045_01349
Unannotated protein.
     
 0.662
GCA_000820045_00136
Unannotated protein.
 
  
  0.574
GCA_000820045_01694
Unannotated protein.
  
  
 0.526
GCA_000820045_01696
Unannotated protein.
  
  
 0.509
GCA_000820045_01697
Unannotated protein.
  
  
 0.505
GCA_000820045_01008
Unannotated protein.
   
 
  0.467
GCA_000820045_03880
Unannotated protein.
   
 
  0.467
GCA_000820045_03985
Unannotated protein.
   
 
  0.467
GCA_000820045_01680
Unannotated protein.
  
 0.441
Your Current Organism:
Aeromonas rivuli
NCBI taxonomy Id: 648794
Other names: A. rivuli, Aeromonas rivuli Figueras et al. 2011, Aeromonas sp. MDC2511, Aeromonas sp. MDC2512, Aeromonas sp. WB4.1-19, Aeromonas sp. WB4.4-101, CECT 7518, DSM 22539, MDC 2511, WB 4.1-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.