Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADU96456.1PFAM: nickel-dependent hydrogenase large subunit; KEGG: nhl:Nhal_1537 nickel-dependent hydrogenase large subunit. (413 aa)    
Predicted Functional Partners:
ADU96457.1
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: pab:PAB1786 cytochrome-c3 hydrogenase delta chain.
 
 
 0.987
ADU96458.1
PFAM: Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: ele:Elen_1254 oxidoreductase FAD/NAD(P)-binding domain protein.
 
   
 0.950
ADU96459.1
KEGG: pho:PH1290 cytochrome-c3 hydrogenase alpha chain.
 
     0.948
ADU97084.1
TIGRFAM: coenzyme F420 hydrogenase, subunit gamma; KEGG: mif:Metin_0513 hypothetical protein; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit.
 
 
 0.945
ADU96987.1
PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: nis:NIS_1552 formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 
 0.860
ADU97082.1
(NiFe) hydrogenase maturation protein HypF; KEGG: aae:aq_672 transcriptional regulatory protein HypF; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase.
 
   
 0.836
ADU96448.1
KEGG: nam:NAMH_0635 NADH-ubiquinone oxidoreductase 23 kda subunit.
     
 0.818
ADU96889.1
KEGG: hmo:HM1_1487 hydrogenase expression/formation protein HypE; TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein.
 
   
 0.815
ADU97090.1
KEGG: gur:Gura_1947 hydrogenase maturation protease; TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein.
  
  
 0.701
ADU97087.1
TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: dps:DP0574 Ni/Fe-hydrogenase, small subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit.
  
  
 0.678
Your Current Organism:
Thermovibrio ammonificans
NCBI taxonomy Id: 648996
Other names: T. ammonificans HB-1, Thermovibrio ammonificans DSM 15698, Thermovibrio ammonificans HB-1, Thermovibrio ammonificans str. HB-1, Thermovibrio ammonificans strain HB-1
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