STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU96974.1PFAM: protein of unknown function DUF214; KEGG: ddf:DEFDS_0471 lipoprotein-releasing system permease protein. (408 aa)    
Predicted Functional Partners:
lolD
ABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
 0.980
ADU96850.1
ABC transporter related protein; KEGG: pmx:PERMA_0680 macrolide export ATP-binding/permease protein MacB; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.899
ADU97149.1
PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: aci:ACIAD2937 outer-membrane lipoproteins carrier protein.
 
 
 
 0.806
lysS
KEGG: pmx:PERMA_1426 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.800
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.
       0.786
ADU96973.1
PFAM: GCN5-related N-acetyltransferase; KEGG: aae:aq_1359 acetyltransferase; Belongs to the acetyltransferase family.
       0.784
ADU97216.1
KEGG: sul:SYO3AOP1_1574 outer membrane protein assembly complex, YaeT protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein.
 
   
 0.728
ADU96976.1
PFAM: protein of unknown function DUF140; KEGG: aae:aq_355 hypothetical protein; Belongs to the MlaE permease family.
 
  
 0.603
ADU96978.1
PFAM: Mammalian cell entry related domain protein; KEGG: tal:Thal_1386 mammalian cell entry related domain protein.
 
   
 0.596
ADU96977.1
KEGG: pmx:PERMA_0256 ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase.
 
     0.595
Your Current Organism:
Thermovibrio ammonificans
NCBI taxonomy Id: 648996
Other names: T. ammonificans HB-1, Thermovibrio ammonificans DSM 15698, Thermovibrio ammonificans HB-1, Thermovibrio ammonificans str. HB-1, Thermovibrio ammonificans strain HB-1
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