STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN46325.1Hypothetical protein. (490 aa)    
Predicted Functional Partners:
SFN46314.1
ABC-2 type transport system ATP-binding protein.
 
     0.943
SFN46342.1
Hypothetical protein.
 
     0.727
SFN52240.1
Aspartyl protease.
  
     0.682
SFN46353.1
Hypothetical protein.
 
     0.657
SFN46366.1
DNA-binding transcriptional regulator, PadR family.
 
     0.626
SFN46906.1
Periplasmic chaperone for outer membrane proteins Skp.
  
     0.553
SFN46302.1
Protein involved in gliding motility SprE.
       0.532
SFN48883.1
Putative DNA-binding domain-containing protein.
  
     0.521
SFN46293.1
Protein CcmA, bactofilin family.
       0.508
SFN74839.1
2TM domain-containing protein.
  
     0.492
Your Current Organism:
Bizionia echini
NCBI taxonomy Id: 649333
Other names: B. echini, Bizionia echini Nedashkovskaya et al. 2010, Bizionia sp. KMM 6177, DSM 23925, KCTC 22015, KMM 6177, LMG 25220, LMG:25220
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.