STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN38473.1DNA binding domain-containing protein, excisionase family. (97 aa)    
Predicted Functional Partners:
SFN38501.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
 
     0.860
SFN38462.1
Helix-turn-helix domain-containing protein.
       0.773
SFN38445.1
Hypothetical protein.
       0.671
SFN38489.1
Hypothetical protein.
       0.542
SFN69290.1
Uncharacterized conserved protein, Tic20 family.
  
     0.482
SFN38260.1
Hypothetical protein.
 
     0.461
SFN38377.1
Hypothetical protein.
       0.405
SFN38396.1
Type III restriction enzyme.
       0.405
SFN38421.1
Protein of unknown function.
       0.405
SFN38432.1
Adenine-specific DNA-methyltransferase.
       0.405
Your Current Organism:
Bizionia echini
NCBI taxonomy Id: 649333
Other names: B. echini, Bizionia echini Nedashkovskaya et al. 2010, Bizionia sp. KMM 6177, DSM 23925, KCTC 22015, KMM 6177, LMG 25220, LMG:25220
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.