STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN52096.1Outer membrane protein TolC. (447 aa)    
Predicted Functional Partners:
SFN52083.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.995
SFN52068.1
Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.965
SFN62667.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.951
SFN49365.1
Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.946
SFN78877.1
Multidrug efflux pump subunit AcrA (membrane-fusion protein).
   
  0.944
SFN78844.1
Outer membrane protein TolC.
  
  
  0.917
SFN53540.1
Outer membrane protein.
  
  
 
0.906
SFN52115.1
Transcriptional regulator, TetR family.
       0.816
SFN49396.1
Hydrophobic/amphiphilic exporter-1, HAE1 family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
  0.771
SFN62643.1
Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
  0.771
Your Current Organism:
Bizionia echini
NCBI taxonomy Id: 649333
Other names: B. echini, Bizionia echini Nedashkovskaya et al. 2010, Bizionia sp. KMM 6177, DSM 23925, KCTC 22015, KMM 6177, LMG 25220, LMG:25220
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