STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN73851.1Predicted PurR-regulated permease PerM. (339 aa)    
Predicted Functional Partners:
SFN73829.1
Rho termination factor, N-terminal domain.
       0.672
SFN61076.1
Hypothetical protein.
  
     0.624
SFN74214.1
Hypothetical protein.
  
     0.568
SFN74073.1
Gas vesicle protein.
 
     0.549
SFN73718.1
Gas vesicle protein.
 
     0.543
SFN47763.1
Family of unknown function.
  
     0.480
SFN73995.1
Transcriptional regulator, AraC family.
  
     0.449
SFN61058.1
GH3 auxin-responsive promoter.
  
     0.443
SFN73816.1
Uncharacterized conserved protein YjbJ, UPF0337 family; Belongs to the UPF0337 (CsbD) family.
       0.429
SFN47772.1
Outer membrane protein assembly factor BamA.
  
     0.405
Your Current Organism:
Bizionia echini
NCBI taxonomy Id: 649333
Other names: B. echini, Bizionia echini Nedashkovskaya et al. 2010, Bizionia sp. KMM 6177, DSM 23925, KCTC 22015, KMM 6177, LMG 25220, LMG:25220
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.