STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN76408.1CubicO group peptidase, beta-lactamase class C family. (521 aa)    
Predicted Functional Partners:
SFN76424.1
Hypothetical protein.
       0.773
SFN76399.1
ATP-binding cassette, subfamily F, member 3.
       0.497
SFN76639.1
D-alanyl-D-alanine carboxypeptidase.
  
     0.493
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
     
 0.486
SFN76378.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.481
SFN65660.1
Membrane dipeptidase.
    0.461
SFN95093.1
Hypothetical protein.
  
     0.449
SFN62396.1
Peptidase family M28.
  
     0.428
SFN95980.1
D-Ala-D-Ala dipeptidase vanX. Metallo peptidase. MEROPS family M15D; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
      0.400
Your Current Organism:
Bizionia echini
NCBI taxonomy Id: 649333
Other names: B. echini, Bizionia echini Nedashkovskaya et al. 2010, Bizionia sp. KMM 6177, DSM 23925, KCTC 22015, KMM 6177, LMG 25220, LMG:25220
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.