STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN88903.1RNA polymerase sigma-70 factor, ECF subfamily. (171 aa)    
Predicted Functional Partners:
SFN88922.1
FecR family protein.
 
  0.920
SFN88936.1
Outer membrane receptor proteins, mostly Fe transport.
    0.899
SFN88883.1
Concanavalin A-like lectin/glucanases superfamily protein.
 
 
   0.738
SFN76247.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.622
SFN96993.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.609
SFN45995.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.604
SFN74708.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.602
SFN54985.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.568
SFN91718.1
Anti-sigma-K factor rskA.
  
 
 0.556
SFN91681.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.553
Your Current Organism:
Bizionia echini
NCBI taxonomy Id: 649333
Other names: B. echini, Bizionia echini Nedashkovskaya et al. 2010, Bizionia sp. KMM 6177, DSM 23925, KCTC 22015, KMM 6177, LMG 25220, LMG:25220
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.