STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0004TonB-dependent receptor plug; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: pru:PRU_2610 outer membrane receptor (OMR) family transporter; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. (990 aa)    
Predicted Functional Partners:
Lbys_0005
RagB/SusD domain protein; InterPro IPR012944; KEGG: pru:PRU_2611 putative lipoprotein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
 
     0.946
Lbys_0271
RagB/SusD domain protein; InterPro IPR012944; KEGG: pru:PRU_2696 putative lipoprotein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
  
 
   0.824
Lbys_0375
RagB/SusD domain protein; InterPro IPR012944; KEGG: fjo:Fjoh_2021 RagB/SusD domain-containing protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
  
 
   0.820
Lbys_0007
RagB/SusD domain protein; InterPro IPR012944; KEGG: zpr:ZPR_1015 hypothetical protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
 
 
   0.802
Lbys_2948
RagB/SusD domain protein; InterPro IPR012944; KEGG: fjo:Fjoh_0781 RagB/SusD domain-containing protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
  
 
   0.792
Lbys_0834
RagB/SusD domain protein; InterPro IPR012944; KEGG: bvu:BVU_0842 hypothetical protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
  
 
   0.762
Lbys_2312
RagB/SusD domain protein; InterPro IPR012944; KEGG: sli:Slin_5058 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family.
  
     0.759
Lbys_2515
RagB/SusD domain protein; InterPro IPR012944; KEGG: cpi:Cpin_7233 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family.
  
     0.756
Lbys_0487
RagB/SusD domain protein; InterPro IPR012944; KEGG: bfr:BF0671 hypothetical protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
  
 
   0.752
Lbys_3425
RagB/SusD domain protein; InterPro IPR012944; KEGG: sli:Slin_6530 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family.
  
 
   0.727
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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