STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0029KEGG: dfe:Dfer_1477 hypothetical protein; SPTR: Putative uncharacterized protein. (181 aa)    
Predicted Functional Partners:
Lbys_0030
KEGG: dfe:Dfer_1478 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.767
Lbys_0031
KEGG: dfe:Dfer_1479 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.650
Lbys_0032
KEGG: dfe:Dfer_1480 hypothetical protein; SPTR: Putative uncharacterized protein.
      
0.650
Lbys_0033
KEGG: dfe:Dfer_1481 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.637
Lbys_0027
Peptidase M28; COGs: COG2234 aminopeptidase; InterPro IPR007484:IPR001478; KEGG: fba:FIC_01278 WD40-like beta propeller; PFAM: peptidase M28; SMART: PDZ/DHR/GLGF domain protein; SPTR: WD40-like beta Propeller; PFAM: Peptidase family M28.
       0.488
Lbys_0028
KEGG: zpr:ZPR_1231 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.488
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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