STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0050COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: cyh:Cyan8802_0039 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1. (369 aa)    
Predicted Functional Partners:
Lbys_1759
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: ter:Tery_3238 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Glycosyltransferase, group 2 family protein; PFAM: Glycosyl transferase family 2.
 
    0.911
Lbys_0054
KEGG: sli:Slin_2569 hypothetical protein; SPTR: Putative uncharacterized protein.
 
  
 0.858
Lbys_1758
COGs: COG3754 Lipopolysaccharide biosynthesis protein; KEGG: cyp:PCC8801_0042 polysaccharide biosynthesis protein; SPTR: Putative uncharacterized protein.
  
 0.831
Lbys_0052
ABC transporter related protein; COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_2772 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter.
  
 
 0.821
Lbys_0053
ABC-2 type transporter; COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525:IPR000412; KEGG: dfe:Dfer_2771 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: ABC-2 type transporter; PFAM: ABC-2 type transporter.
  
  
 0.810
Lbys_3128
COGs: COG3754 Lipopolysaccharide biosynthesis protein; KEGG: cyp:PCC8801_0042 polysaccharide biosynthesis protein; SPTR: Glycosyl transferase group 1.
  
 0.810
Lbys_0051
DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: dfe:Dfer_2773 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.808
Lbys_0055
Soluble ligand binding domain; COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715:IPR019554; KEGG: sli:Slin_2568 soluble ligand binding domain protein; PFAM: Soluble ligand binding domain; polysaccharide export protein; SPTR: Soluble ligand binding domain protein; PFAM: Polysaccharide biosynthesis/export protein; SLBB domain.
  
  
 0.795
Lbys_0057
Chorismate mutase; COGs: COG0077 Prephenate dehydratase; InterProIPR018528:IPR010957:IPR020822:IPR001086:IPR 008242:IPR002701; KEGG: sli:Slin_2566 chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase, type II; SPTR: Chorismate mutase; TIGRFAM: chorismate mutase; PFAM: Prephenate dehydratase; Chorismate mutase type II; TIGRFAM: chorismate mutase domain of proteobacterial P-protein, clade 2.
 
     0.641
Lbys_0048
LmbE family protein; COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: sli:Slin_0661 LmbE family protein; PFAM: LmbE family protein; SPTR: GlcNAc-PI de-N-acetylase family protein; PFAM: GlcNAc-PI de-N-acetylase.
  
  
 0.623
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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