STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0062KEGG: dfe:Dfer_1244 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3098). (69 aa)    
Predicted Functional Partners:
uppP
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
  
    0.817
Lbys_0063
Protein of unknown function DUF214; COGs: COG2177 Cell division protein; InterPro IPR003838; KEGG: dfe:Dfer_1243 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: Putative uncharacterized protein; PFAM: Predicted permease; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
       0.815
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
       0.811
Lbys_0059
Riboflavin biosynthesis protein RibF; COGs: COG0196 FAD synthase; InterPro IPR004821:IPR002606:IPR015864:IPR015865; KEGG: sli:Slin_0790 riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; SPTR: Riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; cytidyltransferase-related domain protein; PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase; cytidyltransferase-related domain; Belongs to the ribF family.
  
  
 0.806
Lbys_0058
KEGG: sli:Slin_2544 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
Lbys_1934
KEGG: dfe:Dfer_5769 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.773
Lbys_2654
KEGG: chu:CHU_2654 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.772
Lbys_1667
KEGG: sli:Slin_2995 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.771
Lbys_1209
KEGG: sli:Slin_0951 N-(5'phosphoribosyl)anthranilate isomerase (PRAI); SPTR: N-(5'-phosphoribosyl)anthranilate isomerase.
 
     0.770
Lbys_2898
KEGG: dfe:Dfer_3784 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.770
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.