STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0082KEGG: sli:Slin_0566 hypothetical protein; SPTR: Putative uncharacterized protein. (1065 aa)    
Predicted Functional Partners:
Lbys_0488
InterPro IPR018550; KEGG: gfo:GFO_0335 secreted protein; PFAM: Lipid A 3-O-deacylase-related; SPTR: Putative uncharacterized protein; PFAM: Lipid A 3-O-deacylase (PagL).
  
  
 0.802
Lbys_3390
KEGG: sli:Slin_0567 hypothetical protein; SPTR: Lipoprotein, putative.
  
     0.771
Lbys_1484
Hypothetical protein; InterPro IPR006162; KEGG: dfe:Dfer_1757 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.770
Lbys_1485
Hypothetical protein; InterPro IPR006162; KEGG: dfe:Dfer_1757 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.768
Lbys_0081
KEGG: dfe:Dfer_1853 lipoprotein; SPTR: Lipoprotein.
  
     0.761
Lbys_3155
COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827; KEGG: dfe:Dfer_3223 surface antigen variable number repeat protein; PFAM: surface antigen variable number repeat-containing protein; SPTR: Surface antigen variable number repeat protein; PFAM: Surface antigen variable number repeat.
  
     0.707
Lbys_0662
KEGG: dfe:Dfer_4263 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.630
Lbys_1292
COGs: COG0642 Signal transduction histidine kinase; InterProIPR013767:IPR003018:IPR003661:IPR003594:IPR 001789:IPR008207:IPR005467:IPR000014:IPR000700:IPR001610:I PR004358; KEGG: dfe:Dfer_5761 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; GAF domain protein; response regulator receiver; Hpt domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; GAF domai [...]
  
  
 0.608
Lbys_1128
OmpA/MotB domain protein; COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: coc:Coch_1593 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; SPTR: OmpA/MotB domain protein; PFAM: OmpA family.
  
  
 0.605
Lbys_2860
KEGG: dfe:Dfer_3880 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.591
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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