STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0106Peptidase M61 domain protein; COGs: COG3975 protease with the C-terminal PDZ domain; InterPro IPR007963; KEGG: phe:Phep_3734 peptidase M61 domain protein; PFAM: peptidase M61 domain protein; SPTR: Peptidase M61 domain protein; PFAM: M61 glycyl aminopeptidase. (487 aa)    
Predicted Functional Partners:
Lbys_0107
RagB/SusD domain protein; InterPro IPR012944; KEGG: dfe:Dfer_1439 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family.
       0.594
Lbys_0103
Rhodanese domain protein; COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR017937:IPR001763:IPR013766:IPR017936; KEGG: fps:FP2000 thioredoxin family protein; PFAM: Rhodanese domain protein; Thioredoxin domain-containing protein; SMART: Rhodanese domain protein; SPTR: Thioredoxin family protein; PFAM: Thioredoxin; Rhodanese-like domain.
       0.580
Lbys_0104
InterPro IPR007272; KEGG: fjo:Fjoh_4883 protein of unknown function DUF395, YeeE/YedE; PFAM: protein of unknown function DUF395 YeeE/YedE; SPTR: Putative uncharacterized protein; PFAM: YeeE/YedE family (DUF395).
       0.580
Lbys_0105
InterPro IPR007272; KEGG: cpi:Cpin_3331 protein of unknown function DUF395 YeeE/YedE; PFAM: protein of unknown function DUF395 YeeE/YedE; SPTR: Putative uncharacterized protein; PFAM: YeeE/YedE family (DUF395).
       0.580
Lbys_0108
TonB-dependent receptor plug; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1438 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
       0.536
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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