STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0109Glycoside hydrolase family 43; COGs: COG3507 Beta-xylosidase; InterPro IPR006710:IPR000421; KEGG: bvu:BVU_1123 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 43; coagulation factor 5/8 type domain protein; SPTR: Glycoside hydrolase family 43 protein; PFAM: F5/8 type C domain; Glycosyl hydrolases family 43. (1070 aa)    
Predicted Functional Partners:
Lbys_0102
KEGG: zpr:ZPR_1375 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.717
Lbys_3265
Protein of unknown function DUF1680; COGs: COG3533 conserved hypothetical protein; InterPro IPR006558:IPR019775:IPR011081:IPR012878; KEGG: cpi:Cpin_4617 protein of unknown function DUF1680; PFAM: protein of unknown function DUF1680; Ig domain protein; SMART: LamG domain protein jellyroll fold domain protein; SPTR: Putative uncharacterized protein; PFAM: Putative glycosyl hydrolase of unknown function (DUF1680); Bacterial Ig-like domain (group 4).
 
     0.609
Lbys_2325
Glycoside hydrolase family 43; COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: zpr:ZPR_1033 glycosyl hydrolase; PFAM: glycoside hydrolase family 43; SPTR: Putative uncharacterized protein; PFAM: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
    0.583
Lbys_0107
RagB/SusD domain protein; InterPro IPR012944; KEGG: dfe:Dfer_1439 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family.
 
     0.493
Lbys_2115
RagB/SusD domain protein; InterPro IPR012944; KEGG: sli:Slin_6450 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: SusD/RagB family protein; PFAM: SusD family.
  
     0.483
Lbys_2513
Protein of unknown function DUF1680; COGs: COG3533 conserved hypothetical protein; InterPro IPR012878; KEGG: fjo:Fjoh_3876 hypothetical protein; PFAM: protein of unknown function DUF1680; SPTR: Putative uncharacterized protein; PFAM: Putative glycosyl hydrolase of unknown function (DUF1680).
 
     0.468
Lbys_0523
Cyclic nucleotide-binding protein; InterPro IPR000595; KEGG: cpi:Cpin_4692 putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SPTR: Putative transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain.
  
     0.461
ADQ16574.1
KEGG: zpr:ZPR_3496 site-specific recombinase; SPTR: Site-specific recombinase; tmRNA as predicted by Rfam (RF00023), score 115.44; PFAM: Recombinase.
  
     0.454
Lbys_0112
Activator of Hsp90 ATPase 1 family protein; COGs: COG3832 conserved hypothetical protein; InterPro IPR013538; KEGG: phe:Phep_1288 activator of HSP90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase 1 family protein; SPTR: Activator of Hsp90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein.
 
     0.441
Lbys_0110
Short-chain dehydrogenase/reductase SDR; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198:IPR002347; KEGG: acd:AOLE_00935 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.438
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.