STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0133Filamentation induced by cAMP protein Fic; COGs: COG2184 Protein involved in cell division; InterPro IPR003812; KEGG: bgr:Bgr_p00180 cell filamentation protein Fic; PFAM: filamentation induced by cAMP protein Fic; SPTR: Putative uncharacterized protein; manually curated; PFAM: Fic/DOC family. (202 aa)    
Predicted Functional Partners:
Lbys_0134
KEGG: cch:Cag_1364 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.776
Lbys_0132
KEGG: pmo:Pmob_0629 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.477
Lbys_0135
Gp37Gp68 family protein; COGs: COG4422 Bacteriophage protein gp37; InterPro IPR011101; KEGG: cph:Cpha266_1493 phage Gp37Gp68 family protein; PFAM: Gp37Gp68 family protein; SPTR: Phage Gp37Gp68 family protein; PFAM: Phage protein Gp37/Gp68.
       0.433
Lbys_0136
KEGG: dal:Dalk_4264 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.433
Lbys_2394
Filamentation induced by cAMP protein Fic; COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: sli:Slin_3797 filamentation induced by cAMP protein Fic; PFAM: filamentation induced by cAMP protein Fic; SPTR: Filamentation induced by cAMP protein Fic; PFAM: Fic/DOC family.
 
  
 0.415
Lbys_1294
Peptidoglycan-binding lysin domain; COGs: COG1652 Uncharacterized protein containing LysM domain; InterPro IPR007055:IPR018392:IPR002482; KEGG: dfe:Dfer_2006 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; transport-associated; SMART: Peptidoglycan-binding LysM; SPTR: Peptidoglycan-binding LysM; PFAM: Putative phospholipid-binding domain; LysM domain.
   
    0.406
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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