STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0144Phage/plasmid-related protein TIGR03299; InterPro IPR017686; KEGG: fjo:Fjoh_2980 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: phage/plasmid-related protein TIGR03299; PFAM: Domain of unknown function (DUF932); TIGRFAM: phage/plasmid-related protein TIGR03299. (357 aa)    
Predicted Functional Partners:
Lbys_0151
InterPro IPR000594; KEGG: fjo:Fjoh_2986 UBA/ThiF-type NAD/FAD binding protein; PFAM: UBA/THIF-type NAD/FAD binding protein; SPTR: UBA/THIF family NAD/FAD binding protein; PFAM: ThiF family; TIGRFAM: PRTRC system ThiF family protein.
 
   
 0.886
Lbys_0143
COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR011344:IPR000424; KEGG: fjo:Fjoh_2979 single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: Single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb).
 
   
 0.881
Lbys_0179
COGs: COG4646 DNA methylase; InterPro IPR003356:IPR001650:IPR002296; KEGG: pgn:PGN_0086 putative DNA methylase; PFAM: N-6 DNA methylase; helicase domain protein; SMART: helicase domain protein; SPTR: Probable DNA methylase; PFAM: N-6 DNA Methylase; Helicase conserved C-terminal domain; SNF2 family N-terminal domain.
 
  
 0.777
Lbys_0161
KEGG: fjo:Fjoh_3000 hypothetical protein; SPTR: Conserved protein found in conjugate transposon TraM; PFAM: Protein of unknown function (DUF3714); TIGRFAM: Bacteroides conjugative transposon TraM protein.
  
     0.726
Lbys_0176
InterPro IPR005094; KEGG: fjo:Fjoh_3018 relaxase/mobilization nuclease family protein; PFAM: Relaxase/mobilization nuclease family protein; SPTR: Relaxase/mobilization nuclease family protein; PFAM: Relaxase/Mobilisation nuclease domain.
  
  
 0.705
Lbys_0160
KEGG: pgn:PGN_1282 conjugate transposon protein TraN; SPTR: Conjugate transposon TraN family protein; TIGRFAM: Bacteroides conjugative transposon TraN protein.
  
     0.687
Lbys_0142
Hypothetical protein.
       0.625
Lbys_0145
Hypothetical protein; KEGG: ath:AT2G32950 COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitin-protein ligase; SPTR: Putative uncharacterized protein.
       0.608
Lbys_0147
PRTRC system protein E; InterPro IPR022273; KEGG: fjo:Fjoh_2981 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: PRTRC system protein E; TIGRFAM: PRTRC system protein E.
       0.602
Lbys_0169
KEGG: fjo:Fjoh_3006 hypothetical protein; SPTR: Protein found in conjugate transposon.
  
     0.593
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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