STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0147PRTRC system protein E; InterPro IPR022273; KEGG: fjo:Fjoh_2981 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: PRTRC system protein E; TIGRFAM: PRTRC system protein E. (179 aa)    
Predicted Functional Partners:
Lbys_0146
KEGG: enc:ECL_03140 rhs family protein; SPTR: Putative uncharacterized protein.
       0.770
Lbys_0148
KEGG: fjo:Fjoh_2983 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: PRTRC system protein C.
       0.746
Lbys_0145
Hypothetical protein; KEGG: ath:AT2G32950 COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitin-protein ligase; SPTR: Putative uncharacterized protein.
       0.721
Lbys_0149
KEGG: fjo:Fjoh_2984 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.705
Lbys_0150
KEGG: fjo:Fjoh_2985 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: PRTRC system protein B.
       0.684
Lbys_0151
InterPro IPR000594; KEGG: fjo:Fjoh_2986 UBA/ThiF-type NAD/FAD binding protein; PFAM: UBA/THIF-type NAD/FAD binding protein; SPTR: UBA/THIF family NAD/FAD binding protein; PFAM: ThiF family; TIGRFAM: PRTRC system ThiF family protein.
       0.684
Lbys_0144
Phage/plasmid-related protein TIGR03299; InterPro IPR017686; KEGG: fjo:Fjoh_2980 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: phage/plasmid-related protein TIGR03299; PFAM: Domain of unknown function (DUF932); TIGRFAM: phage/plasmid-related protein TIGR03299.
       0.602
Lbys_0143
COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR011344:IPR000424; KEGG: fjo:Fjoh_2979 single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: Single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb).
       0.469
Lbys_0142
Hypothetical protein.
       0.468
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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