STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0151InterPro IPR000594; KEGG: fjo:Fjoh_2986 UBA/ThiF-type NAD/FAD binding protein; PFAM: UBA/THIF-type NAD/FAD binding protein; SPTR: UBA/THIF family NAD/FAD binding protein; PFAM: ThiF family; TIGRFAM: PRTRC system ThiF family protein. (268 aa)    
Predicted Functional Partners:
Lbys_0144
Phage/plasmid-related protein TIGR03299; InterPro IPR017686; KEGG: fjo:Fjoh_2980 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: phage/plasmid-related protein TIGR03299; PFAM: Domain of unknown function (DUF932); TIGRFAM: phage/plasmid-related protein TIGR03299.
 
   
 0.886
thiE
Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
  
  
 0.832
Lbys_0150
KEGG: fjo:Fjoh_2985 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: PRTRC system protein B.
       0.796
Lbys_0381
Phosphomethylpyrimidine kinase; COGs: COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; InterPro IPR013749:IPR004399; KEGG: zpr:ZPR_1974 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; PRIAM: Phosphomethylpyrimidine kinase; SPTR: Phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase.
  
  
 0.782
Lbys_0149
KEGG: fjo:Fjoh_2984 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.771
Lbys_2866
COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR000192:IPR020578:IPR016454; KEGG: dfe:Dfer_4416 aminotransferase class V; PFAM: aminotransferase class V; PRIAM: Cysteine desulfurase; SPTR: Aminotransferase class V; PFAM: Aminotransferase class-V.
   
 0.752
Lbys_0179
COGs: COG4646 DNA methylase; InterPro IPR003356:IPR001650:IPR002296; KEGG: pgn:PGN_0086 putative DNA methylase; PFAM: N-6 DNA methylase; helicase domain protein; SMART: helicase domain protein; SPTR: Probable DNA methylase; PFAM: N-6 DNA Methylase; Helicase conserved C-terminal domain; SNF2 family N-terminal domain.
 
 
 
 0.751
Lbys_0148
KEGG: fjo:Fjoh_2983 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: PRTRC system protein C.
     
 0.728
Lbys_2560
Ankyrin; InterPro IPR002110:IPR020683; KEGG: dfe:Dfer_1667 ankyrin; PFAM: Ankyrin; SMART: Ankyrin; SPTR: Ankyrin; PFAM: Ankyrin repeat.
  
 0.713
Lbys_0143
COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR011344:IPR000424; KEGG: fjo:Fjoh_2979 single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: Single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb).
 
  
 0.702
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.