Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Lbys_0156KEGG: bfs:BF1793 hypothetical protein; SPTR: Putative uncharacterized protein. (103 aa)    
Predicted Functional Partners:
Lbys_0155
KEGG: bfs:BF1794 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: DNA binding domain, excisionase family.
    
0.844
Lbys_0161
KEGG: fjo:Fjoh_3000 hypothetical protein; SPTR: Conserved protein found in conjugate transposon TraM; PFAM: Protein of unknown function (DUF3714); TIGRFAM: Bacteroides conjugative transposon TraM protein.
 
     0.829
Lbys_0160
KEGG: pgn:PGN_1282 conjugate transposon protein TraN; SPTR: Conjugate transposon TraN family protein; TIGRFAM: Bacteroides conjugative transposon TraN protein.
 
     0.824
Lbys_0168
KEGG: fjo:Fjoh_3005 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.808
Lbys_0166
KEGG: fjo:Fjoh_3003 hypothetical protein; SPTR: Conserved protein found in conjugate transposon TraI.
 
     0.805
Lbys_0173
COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: fjo:Fjoh_3016 chromosome partitioning ATPase; SPTR: Protein found in conjugate transposon; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
 
     0.801
Lbys_0176
InterPro IPR005094; KEGG: fjo:Fjoh_3018 relaxase/mobilization nuclease family protein; PFAM: Relaxase/mobilization nuclease family protein; SPTR: Relaxase/mobilization nuclease family protein; PFAM: Relaxase/Mobilisation nuclease domain.
 
     0.793
Lbys_0165
InterPro IPR012424; KEGG: fjo:Fjoh_3002 TraJ family protein conjugative transposon; PFAM: TraJ family protein conjugative transposon; SPTR: TraJ family protein conjugative transposon; PFAM: Homologues of TraJ from Bacteroides conjugative transposon; TIGRFAM: Bacteroides conjugative transposon TraJ protein.
 
     0.781
Lbys_0186
KEGG: fjo:Fjoh_3023 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.775
Lbys_0179
COGs: COG4646 DNA methylase; InterPro IPR003356:IPR001650:IPR002296; KEGG: pgn:PGN_0086 putative DNA methylase; PFAM: N-6 DNA methylase; helicase domain protein; SMART: helicase domain protein; SPTR: Probable DNA methylase; PFAM: N-6 DNA Methylase; Helicase conserved C-terminal domain; SNF2 family N-terminal domain.
 
    0.744
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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