STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0163KEGG: hmg:100198550 hypothetical protein LOC100198550; SPTR: Putative uncharacterized protein. (142 aa)    
Predicted Functional Partners:
Lbys_0164
KEGG: fjo:Fjoh_3001 hypothetical protein; SPTR: Conjugative transposon protein TraK; TIGRFAM: Bacteroides conjugative transposon TraK protein.
       0.769
Lbys_0162
Hypothetical protein; KEGG: pmx:PERMA_A0011 DNA replication protein DnaC; SPTR: Putative uncharacterized protein.
       0.752
Lbys_0161
KEGG: fjo:Fjoh_3000 hypothetical protein; SPTR: Conserved protein found in conjugate transposon TraM; PFAM: Protein of unknown function (DUF3714); TIGRFAM: Bacteroides conjugative transposon TraM protein.
       0.734
Lbys_0166
KEGG: fjo:Fjoh_3003 hypothetical protein; SPTR: Conserved protein found in conjugate transposon TraI.
       0.723
Lbys_0165
InterPro IPR012424; KEGG: fjo:Fjoh_3002 TraJ family protein conjugative transposon; PFAM: TraJ family protein conjugative transposon; SPTR: TraJ family protein conjugative transposon; PFAM: Homologues of TraJ from Bacteroides conjugative transposon; TIGRFAM: Bacteroides conjugative transposon TraJ protein.
       0.705
Lbys_0160
KEGG: pgn:PGN_1282 conjugate transposon protein TraN; SPTR: Conjugate transposon TraN family protein; TIGRFAM: Bacteroides conjugative transposon TraN protein.
       0.665
Lbys_0168
KEGG: fjo:Fjoh_3005 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.649
Lbys_0167
COGs: COG3451 Type IV secretory pathway VirB4 protein; KEGG: fjo:Fjoh_3004 type IV secretory pathway VirB4 components-like protein; SPTR: Protein found in conjugate transposon; TIGRFAM: Bacteroides conjugation system ATPase, TraG family.
       0.631
Lbys_0169
KEGG: fjo:Fjoh_3006 hypothetical protein; SPTR: Protein found in conjugate transposon.
       0.626
Lbys_0159
InterPro IPR018899; KEGG: bfr:BF1350 conjugate transposon protein TraO; PFAM: Conjugative transposon protein TraO; SPTR: Protein found in conjugate transposon TraO; PFAM: Conjugative transposon protein TraO.
       0.612
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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