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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0171KEGG: fjo:Fjoh_3014 hypothetical protein; SPTR: Putative uncharacterized protein. (211 aa)    
Predicted Functional Partners:
Lbys_0172
KEGG: fjo:Fjoh_3015 hypothetical protein; SPTR: Protein found in conjugate transposon; PFAM: Protein of unknown function (DUF3408).
       0.796
Lbys_0173
COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: fjo:Fjoh_3016 chromosome partitioning ATPase; SPTR: Protein found in conjugate transposon; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
       0.796
Lbys_0170
KEGG: cpv:cgd1_3240 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.568
Lbys_0174
Hypothetical protein.
       0.421
Lbys_0169
KEGG: fjo:Fjoh_3006 hypothetical protein; SPTR: Protein found in conjugate transposon.
  
    0.410
Lbys_0168
KEGG: fjo:Fjoh_3005 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.400
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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