STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0180Domain of unknown function DUF1896; InterPro IPR015082; KEGG: bth:BT_2325 hypothetical protein; PFAM: Domain of unknown function DUF1896; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1896). (145 aa)    
Predicted Functional Partners:
Lbys_0179
COGs: COG4646 DNA methylase; InterPro IPR003356:IPR001650:IPR002296; KEGG: pgn:PGN_0086 putative DNA methylase; PFAM: N-6 DNA methylase; helicase domain protein; SMART: helicase domain protein; SPTR: Probable DNA methylase; PFAM: N-6 DNA Methylase; Helicase conserved C-terminal domain; SNF2 family N-terminal domain.
  
    0.819
Lbys_0181
KEGG: bcu:BCAH820_4373 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.493
Lbys_0182
Hypothetical protein; KEGG: tet:TTHERM_00657240 Guanylate-binding protein, N-terminal domain containing protein; SPTR: Putative uncharacterized protein.
       0.411
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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