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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0183KilA-N, DNA-binding domain; InterPro IPR018873; KEGG: ddf:DEFDS_0289 hypothetical protein; PFAM: KilA-N, DNA-binding domain; SPTR: Putative uncharacterized protein; PFAM: ORF6N domain. (293 aa)    
Predicted Functional Partners:
Lbys_1357
COGs: COG3943 Virulence protein; InterPro IPR011204; KEGG: apj:APJL_0299 hypothetical protein; SPTR: Putative uncharacterized protein.
     0.924
Lbys_0184
DNA topoisomerase III; COGs: COG0550 Topoisomerase IA; InterProIPR018089:IPR005738:IPR006171:IPR013497:IPR 000380:IPR006154:IPR003601:IPR003602; KEGG: fjo:Fjoh_3021 DNA topoisomerase; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; SPTR: DNA topoisomerase; TIGRFAM: DNA topoisomerase III; PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase III, bacteria and conjugative plasmid.
 
     0.836
Lbys_0186
KEGG: fjo:Fjoh_3023 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.775
Lbys_0185
KEGG: fjo:Fjoh_3022 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.748
Lbys_0188
Tetracycline regulation of excision, RteC; InterPro IPR018534; KEGG: fjo:Fjoh_3024 hypothetical protein; PFAM: Tetracycline regulation of excision, RteC; SPTR: Regulatory protein RteC family protein; PFAM: RteC protein.
 
     0.695
Lbys_0187
KEGG: bth:BT_0109 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.503
Lbys_0179
COGs: COG4646 DNA methylase; InterPro IPR003356:IPR001650:IPR002296; KEGG: pgn:PGN_0086 putative DNA methylase; PFAM: N-6 DNA methylase; helicase domain protein; SMART: helicase domain protein; SPTR: Probable DNA methylase; PFAM: N-6 DNA Methylase; Helicase conserved C-terminal domain; SNF2 family N-terminal domain.
 
     0.493
Lbys_1543
Glutamate synthase (NADH) large subunit; COGs: COG0069 Glutamate synthase domain 2; InterProIPR000583:IPR006982:IPR002932:IPR002489:IPR 017932; KEGG: dfe:Dfer_5479 glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein; PRIAM: Glutamate synthase (ferredoxin); SPTR: Glutamate synthase (Ferredoxin); PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.
   
 
 0.493
Lbys_3028
Hypothetical protein; InterPro IPR001451; KEGG: sli:Slin_6090 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
 0.489
Lbys_0161
KEGG: fjo:Fjoh_3000 hypothetical protein; SPTR: Conserved protein found in conjugate transposon TraM; PFAM: Protein of unknown function (DUF3714); TIGRFAM: Bacteroides conjugative transposon TraM protein.
  
     0.433
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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