STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0195Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060; KEGG: cpi:Cpin_5386 transcriptional regulator, AraC family; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family. (269 aa)    
Predicted Functional Partners:
Lbys_3409
Regulatory protein TetR; InterPro IPR001647; KEGG: fjo:Fjoh_3291 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: TetR family transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.613
Lbys_0189
Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR020449:IPR018060; KEGG: fjo:Fjoh_4441 helix-turn-helix domain-containing protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
 
     0.610
Lbys_2799
COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_4648 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
  
     0.563
Lbys_0194
Alcohol dehydrogenase zinc-binding domain protein; COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154:IPR013149; KEGG: cpi:Cpin_4859 alcohol dehydrogenase zinc-binding domain protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: Possible NADPH:quinone reductase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase.
       0.498
Lbys_2798
KEGG: dfe:Dfer_4647 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.493
Lbys_1878
Regulatory protein TetR; InterPro IPR001647; KEGG: phe:Phep_3455 regulatory protein TetR; PFAM: regulatory protein TetR; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.489
Lbys_0806
Transcriptional regulator, TetR family; COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: fjo:Fjoh_2547 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: TetR family transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.463
Lbys_0192
Short-chain dehydrogenase/reductase SDR; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR002347; KEGG: cpi:Cpin_0127 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase.
 
     0.444
Lbys_0196
NmrA family protein; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; KEGG: sli:Slin_1587 NmrA family protein; SPTR: NmrA family protein; PFAM: NmrA-like family.
       0.432
Lbys_0962
Intradiol ring-cleavage dioxygenase; COGs: COG3485 Protocatechuate 3 4-dioxygenase beta subunit; InterPro IPR000627; KEGG: rbi:RB2501_01006 hypothetical protein; PFAM: intradiol ring-cleavage dioxygenase; SPTR: Putative uncharacterized protein; PFAM: Dioxygenase.
  
   
 0.418
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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