STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0220KEGG: dfe:Dfer_3756 hypothetical protein; SPTR: Putative uncharacterized protein. (175 aa)    
Predicted Functional Partners:
Lbys_2309
KEGG: coc:Coch_0630 hypothetical protein; SPTR: Putative uncharacterized protein.
   
 
 0.622
Lbys_2200
Tail Collar domain protein; COGs: COG4675 Microcystin-dependent protein; InterPro IPR011083; KEGG: shw:Sputw3181_3688 phage tail collar domain-containing protein; PFAM: Tail Collar domain protein; SPTR: Phage Tail Collar domain protein; PFAM: Phage Tail Collar Domain.
   
   0.611
Lbys_0696
Sugar-phosphate isomerase, RpiB/LacA/LacB family; COGs: COG0698 Ribose 5-phosphate isomerase RpiB; InterPro IPR004785:IPR003500; KEGG: chu:CHU_3631 ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; SPTR: Ribose 5-phosphate isomerase B; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family.
  
  
 0.608
Lbys_2602
KEGG: dfe:Dfer_1668 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.595
Lbys_3524
KEGG: dfe:Dfer_1218 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.567
Lbys_0219
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
     
 0.518
Lbys_0218
COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR016160:IPR015590:IPR011408; KEGG: fba:FIC_01836 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: Aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
     
 0.503
Lbys_0492
KEGG: dfe:Dfer_2554 hypothetical protein; SPTR: Outer membrane protein.
  
     0.500
Lbys_1641
Glycoside hydrolase family 28; COGs: COG5434 Endopygalactorunase; InterPro IPR001087:IPR000743:IPR006626; KEGG: cpi:Cpin_5506 lipolytic protein G-D-S-L family; PFAM: glycoside hydrolase family 28; lipolytic protein G-D-S-L family; SPTR: Lipolytic protein G-D-S-L family; PFAM: Glycosyl hydrolases family 28; GDSL-like Lipase/Acylhydrolase.
   
 
 0.489
Lbys_1348
InterPro IPR005094; KEGG: dfe:Dfer_5231 relaxase/mobilization nuclease family protein; PFAM: Relaxase/mobilization nuclease family protein; SPTR: Relaxase/mobilization nuclease family protein; PFAM: Relaxase/Mobilisation nuclease domain.
 
    0.482
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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