Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lbys_0232Hypothetical protein; InterPro IPR010916:IPR013026; KEGG: dfe:Dfer_4967 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2723). (995 aa)    
Predicted Functional Partners:
Lbys_0046
KEGG: dfe:Dfer_3101 conserved hypothetical protein, membrane; SPTR: Putative uncharacterized protein; PFAM: Bacterial membrane protein YfhO.
  
     0.772
Lbys_3171
COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR016474:IPR010827:IPR000184; KEGG: sli:Slin_4434 outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; SPTR: Outer membrane protein assembly complex, YaeT protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein.
  
     0.764
Lbys_2590
KEGG: dfe:Dfer_3804 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.759
Lbys_3172
InterPro IPR005632; KEGG: sli:Slin_4435 outer membrane chaperone Skp (OmpH); PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); manually curated; PFAM: Outer membrane protein (OmpH-like).
  
     0.758
Lbys_1147
KEGG: sli:Slin_0989 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.756
Lbys_0698
Outer membrane assembly lipoprotein YfiO; COGs: COG4105 DNA uptake lipoprotein; InterPro IPR017689; KEGG: dfe:Dfer_5214 outer membrane assembly lipoprotein YfiO; SPTR: Outer membrane assembly lipoprotein YfiO; TIGRFAM: outer membrane assembly lipoprotein YfiO; TIGRFAM: outer membrane assembly lipoprotein YfiO.
  
     0.747
Lbys_2058
Protein of unknown function DUF2133; COGs: COG1729 conserved hypothetical protein; InterPro IPR019734:IPR018704:IPR013026; KEGG: dfe:Dfer_3815 tetratricopeptide domain protein; PFAM: Protein of unknown function DUF2133; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide domain protein; PFAM: Tetratricopeptide repeat; Uncharacterized protein conserved in bacteria (DUF2133).
  
     0.740
Lbys_2769
InterPro IPR000962; KEGG: sli:Slin_5647 transcriptional regulator, TraR/DksA family; SPTR: Transcriptional regulator, TraR/DksA family; PFAM: Prokaryotic dksA/traR C4-type zinc finger.
  
     0.740
Lbys_1441
KEGG: dfe:Dfer_5204 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.737
Lbys_1588
KEGG: sli:Slin_0475 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3109).
  
     0.713
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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