STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0239COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: sli:Slin_0096 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; SPTR: Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase family. (300 aa)    
Predicted Functional Partners:
Lbys_2933
(p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
 
 
 0.938
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
 
  
 0.935
Lbys_1167
COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: dfe:Dfer_2808 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; SPTR: Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase family.
  
  
 
0.928
Lbys_0240
Protein of unknown function DUF814; COGs: COG1293 RNA-binding protein homologous to eukaryotic snRNP; InterPro IPR008616:IPR008532; KEGG: dfe:Dfer_2016 protein of unknown function DUF814; PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF814); Fibronectin-binding protein A N-terminus (FbpA).
 
     0.827
Lbys_0236
NUDIX hydrolase; InterPro IPR020084:IPR000086; KEGG: dfe:Dfer_0471 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: NUDIX hydrolase; PFAM: NUDIX domain.
     
 0.547
Lbys_0237
Rhodanese domain protein; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: dfe:Dfer_3119 beta-lactamase domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Metallo-beta-lactamase superfamily protein; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain.
       0.539
Lbys_0238
Protein of unknown function DUF81; InterPro IPR002781; KEGG: pgi:PG1572 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: Membrane protein, putative; PFAM: Sulfite exporter TauE/SafE.
       0.539
Lbys_0235
Cytochrome c-related protein; InterPro IPR009056; KEGG: chu:CHU_2867 cytochrome c-related protein; SPTR: Class I diheme cytochrome c; PFAM: Cytochrome c.
 
     0.476
Lbys_1928
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
 
 
    0.419
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.