STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0301Protein of unknown function DUF486; COGs: COG3169 conserved hypothetical protein; InterPro IPR007437; KEGG: dfe:Dfer_2981 protein of unknown function DUF486; PFAM: protein of unknown function DUF486; SPTR: Putative uncharacterized protein; manually curated; PFAM: Protein of unknown function, DUF486. (122 aa)    
Predicted Functional Partners:
Lbys_0300
InterPro IPR000595; KEGG: fjo:Fjoh_3294 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding protein; manually curated; PFAM: Cyclic nucleotide-binding domain.
       0.572
Lbys_0299
Small multidrug resistance protein; COGs: COG2076 Membrane transporter of cations and cationic drugs; InterPro IPR000390; KEGG: cpi:Cpin_4003 small multidrug resistance protein; PFAM: small multidrug resistance protein; SPTR: Small multidrug resistance protein; PFAM: Small Multidrug Resistance protein.
       0.457
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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