Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
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[Homology]
Score
Lbys_0352COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006102:IPR006103:IPR006101; KEGG: sli:Slin_0624 beta-galactosidase; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; PRIAM: Beta-galactosidase; SPTR: Beta-galactosidase/beta-glucuronidase; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Di-glucose binding within endoplasmic reticulum; Glycosyl hydrolases family 2, sugar binding domain. (859 aa)    
Predicted Functional Partners:
Lbys_2505
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.933
Lbys_2160
Beta-N-acetylhexosaminidase; COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR001540:IPR015883; KEGG: cpi:Cpin_1798 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Beta-N-acetylhexosaminidase; PFAM: Glycosyl hydrolase family 20, catalytic domain; Glycosyl hydrolase family 20, domain 2.
 
 0.929
Lbys_1703
Beta-N-acetylhexosaminidase; COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015882:IPR015883:IPR001540; KEGG: sli:Slin_2031 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; Beta-N-acetylhexosaminidase, subunit a/b; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Beta-hexosaminidase; PFAM: Glycosyl hydrolase family 20, catalytic domain; Glycosyl hydrolase family 20, domain 2.
  
 0.920
Lbys_2938
ROK family protein; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: dfe:Dfer_3960 ROK family protein; PFAM: ROK family protein; SPTR: ROK family protein; PFAM: ROK family.
    
 0.907
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
     
 0.901
xylA
COGs: COG2115 Xylose isomerase; InterPro IPR012307:IPR001998:IPR013452; KEGG: phe:Phep_1604 xylose isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel; PRIAM: Xylose isomerase; SPTR: Xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: xylose isomerase; Belongs to the xylose isomerase family.
    
 0.817
Lbys_0351
Glycoside hydrolase family 16; COGs: COG2273 Beta-glucanase/Beta-glucan synthetase; InterPro IPR000757; KEGG: sus:Acid_0712 hypothetical protein; PFAM: glycoside hydrolase family 16; SPTR: Agarase; PFAM: Glycosyl hydrolases family 16.
 
     0.805
Lbys_0350
InterPro IPR005181; KEGG: sli:Slin_2555 protein of unknown function DUF303 acetylesterase putative; PFAM: protein of unknown function DUF303 acetylesterase; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF303).
   
   0.783
Lbys_1260
Glycoside hydrolase family 3 domain protein; COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764:IPR002772:IPR019800; KEGG: bth:BT_4714 periplasmic beta-glucosidase precursor, xylosidase/arabinosidase; PFAM: glycoside hydrolase family 3 domain protein; SPTR: Periplasmic beta-glucosidase, xylosidase/arabinosidase; PFAM: Glycosyl hydrolase family 3 C terminal domain; Glycosyl hydrolase family 3 N terminal domain; Belongs to the glycosyl hydrolase 3 family.
 
   
 0.765
Lbys_0274
COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR017975:IPR019800:IPR001764:IPR002772; KEGG: pdi:BDI_2428 beta-glucosidase; PFAM: glycoside hydrolase family 3 domain protein; SPTR: Glycoside hydrolase family 3 protein; PFAM: Glycosyl hydrolase family 3 C terminal domain; Glycosyl hydrolase family 3 N terminal domain; Belongs to the glycosyl hydrolase 3 family.
 
   
 0.740
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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