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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0352COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006102:IPR006103:IPR006101; KEGG: sli:Slin_0624 beta-galactosidase; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; PRIAM: Beta-galactosidase; SPTR: Beta-galactosidase/beta-glucuronidase; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Di-glucose binding within endoplasmic reticulum; Glycosyl hydrolases family 2, sugar binding domain. (859 aa)    
Predicted Functional Partners:
Lbys_2505
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.933
Lbys_2938
ROK family protein; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: dfe:Dfer_3960 ROK family protein; PFAM: ROK family protein; SPTR: ROK family protein; PFAM: ROK family.
    
 0.908
xylA
COGs: COG2115 Xylose isomerase; InterPro IPR012307:IPR001998:IPR013452; KEGG: phe:Phep_1604 xylose isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel; PRIAM: Xylose isomerase; SPTR: Xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: xylose isomerase; Belongs to the xylose isomerase family.
    
 0.819
Lbys_0351
Glycoside hydrolase family 16; COGs: COG2273 Beta-glucanase/Beta-glucan synthetase; InterPro IPR000757; KEGG: sus:Acid_0712 hypothetical protein; PFAM: glycoside hydrolase family 16; SPTR: Agarase; PFAM: Glycosyl hydrolases family 16.
 
     0.809
Lbys_0350
InterPro IPR005181; KEGG: sli:Slin_2555 protein of unknown function DUF303 acetylesterase putative; PFAM: protein of unknown function DUF303 acetylesterase; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF303).
   
   0.789
Lbys_1865
KEGG: cpi:Cpin_4528 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Alginate lyase.
     0.698
Lbys_0353
RagB/SusD domain protein; InterPro IPR012944; KEGG: rmr:Rmar_1078 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
       0.631
Lbys_0354
TonB-dependent receptor plug; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: fjo:Fjoh_2077 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
       0.631
Lbys_0355
Histidine kinase; COGs: COG0642 Signal transduction histidine kinase; InterProIPR018060:IPR005467:IPR001789:IPR018062:IPR 011110:IPR011123:IPR003661:IPR003594:IPR000005:IPR004358; KEGG: bth:BT_3334 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system'); PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two component regulator three Y domain-containing protein; Two component regulator propeller; response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; [...]
     
 0.562
Lbys_1755
alpha-L-rhamnosidase; InterPro IPR013737:IPR008902:IPR016007; KEGG: bth:BT_2524 alpha-rhamnosidase; PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; SPTR: Putative uncharacterized protein; PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain.
 
 0.543
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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