Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lbys_0397Hypothetical protein; InterPro IPR003006; KEGG: dfe:Dfer_2881 hypothetical protein; SPTR: Putative uncharacterized protein. (273 aa)    
Predicted Functional Partners:
Lbys_0398
TatD-related deoxyribonuclease; COGs: COG1099 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR001130; KEGG: dfe:Dfer_2882 TatD-related deoxyribonuclease; PFAM: TatD-related deoxyribonuclease; SPTR: TatD-related deoxyribonuclease; PFAM: TatD related DNase.
 
   
 0.960
Lbys_0401
KEGG: dfe:Dfer_2885 hypothetical protein; SPTR: Putative uncharacterized protein.
 
   
 0.960
Lbys_0399
InterPro IPR000537; KEGG: phe:Phep_0429 UbiA prenyltransferase; PFAM: UbiA prenyltransferase; SPTR: UbiA prenyltransferase; PFAM: UbiA prenyltransferase family.
 
   
 0.958
Lbys_0402
Type I phosphodiesterase/nucleotide pyrophosphatase; COGs: COG1524 Uncharacterized protein of the AP superfamily; InterPro IPR002591; KEGG: dfe:Dfer_2886 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase.
 
   
 0.958
Lbys_0400
COGs: COG0337 3-dehydroquinate synthetase; InterPro IPR016303:IPR002658; KEGG: dfe:Dfer_2884 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; PRIAM: 3-dehydroquinate synthase; SPTR: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase.
 
   
 0.948
Lbys_1152
Cytochrome c class I; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterProIPR000601:IPR003088:IPR002324:IPR009056:IPR 001202; KEGG: dfe:Dfer_2188 cytochrome c class I; PFAM: cytochrome c class I; PKD domain containing protein; SMART: PKD domain containing protein; SPTR: Cytochrome c class I; PFAM: Cytochrome c; Trehalose utilisation.
  
     0.736
Lbys_0394
KEGG: rbi:RB2501_00261 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.668
Lbys_0395
YceI family protein; InterPro IPR007372; KEGG: cpi:Cpin_0225 YceI family protein; PFAM: YceI family protein; SPTR: YceI family protein; PFAM: YceI-like domain; Belongs to the UPF0312 family.
       0.668
Lbys_0396
KEGG: cpi:Cpin_0224 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.668
Lbys_2490
Cytochrome c class I; InterPro IPR009056:IPR002324:IPR003088; KEGG: dfe:Dfer_3236 cytochrome c class I; PFAM: cytochrome c class I; SPTR: Cytochrome c class I.
  
     0.415
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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