STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0403Protein of unknown function DUF1486; InterPro IPR009959; KEGG: pgi:PG1451 hypothetical protein; PFAM: protein of unknown function DUF1486; SPTR: Putative uncharacterized protein; PFAM: SnoaL-like polyketide cyclase. (134 aa)    
Predicted Functional Partners:
Lbys_0404
Transcriptional regulator, HxlR family; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: pgi:PG1450 hypothetical protein; PFAM: helix-turn-helix HxlR type; SPTR: Transcriptional regulator family protein; PFAM: HxlR-like helix-turn-helix.
 
     0.655
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.