STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0425InterPro IPR001845; KEGG: cpi:Cpin_4829 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family. (106 aa)    
Predicted Functional Partners:
Lbys_0424
Activator of Hsp90 ATPase 1 family protein; COGs: COG3832 conserved hypothetical protein; InterPro IPR013538; KEGG: phe:Phep_2122 activator of HSP90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase 1 family protein; SPTR: Activator of Hsp90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein.
 
    0.941
Lbys_0423
Hypothetical protein; InterPro IPR016944; KEGG: phe:Phep_2123 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.908
Lbys_0422
Domain of unknown function DUF1801; COGs: COG4430 conserved hypothetical protein; InterPro IPR014922; KEGG: gtn:GTNG_1580 hypothetical protein; PFAM: Domain of unknown function DUF1801; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DU1801).
 
     0.816
Lbys_0421
Bifunctional deaminase-reductase domain protein; COGs: COG0262 Dihydrofolate reductase; InterPro IPR002734; KEGG: fjo:Fjoh_0157 deaminase-reductase domain-containing protein; PFAM: bifunctional deaminase-reductase domain protein; SPTR: Deaminase-reductase domain protein; PFAM: RibD C-terminal domain.
       0.436
Lbys_0426
Methyltransferase type 11; COGs: COG2230 Cyclopropane fatty acid synthase and related methyltransferase; InterPro IPR013216; KEGG: str:Sterm_0996 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: SAM-dependent methyltransferase; PFAM: Methyltransferase domain.
  
  
 0.405
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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