STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0440OmpA/MotB domain protein; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665:IPR011659:IPR006664; KEGG: sli:Slin_2542 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; WD40-like beta Propeller containing protein; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family. (705 aa)    
Predicted Functional Partners:
Lbys_3483
Hypothetical protein; KEGG: dfe:Dfer_5750 surface antigen (D15); SPTR: Surface antigen (D15).
 
   0.761
Lbys_0442
Glycosyl transferase family 39; COGs: COG5305 membrane protein; InterPro IPR003342; KEGG: sli:Slin_2543 membrane protein-like protein; PFAM: glycosyl transferase family 39; SPTR: Membrane protein-like protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
 
     0.746
Lbys_2955
Putative membrane protein; InterPro IPR019861; KEGG: sli:Slin_5231 hypothetical protein; SPTR: Putative membrane protein; TIGRFAM: putative membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific putative membrane protein.
 
     0.699
Lbys_0441
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_4680 ribonuclease III; PFAM: glycosyl transferase family 2; SPTR: Ribonuclease III; PFAM: Glycosyl transferase family 2.
  
    0.693
Lbys_0443
InterPro IPR001173; KEGG: dfe:Dfer_3529 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2.
  
    0.693
Lbys_2179
Hypothetical protein; InterPro IPR001412; KEGG: sli:Slin_5618 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 
   0.690
Lbys_0444
KEGG: sli:Slin_2675 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.689
Lbys_3161
KEGG: sli:Slin_0660 hypothetical protein; SPTR: Putative uncharacterized protein.
  
   0.685
Lbys_1110
InterPro IPR001440:IPR019734:IPR013026; KEGG: sli:Slin_3219 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Tetratricopeptide TPR_2 repeat protein; manually curated.
 
    0.684
Lbys_1128
OmpA/MotB domain protein; COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: coc:Coch_1593 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; SPTR: OmpA/MotB domain protein; PFAM: OmpA family.
  
 
 0.660
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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