STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0481Hypothetical protein; InterPro IPR001387; KEGG: fjo:Fjoh_4999 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix. (138 aa)    
Predicted Functional Partners:
Lbys_1919
DinB family protein; InterPro IPR007837; KEGG: fjo:Fjoh_0790 DinB family protein; PFAM: DinB family protein; SPTR: Putative uncharacterized protein; PFAM: DinB family.
  
     0.594
Lbys_2444
KEGG: phe:Phep_1806 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Methylamine utilisation protein MauE.
  
     0.527
Lbys_1989
KEGG: phe:Phep_1806 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Methylamine utilisation protein MauE.
  
     0.519
Lbys_1987
KEGG: cpi:Cpin_2265 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
  
     0.512
Lbys_0080
Hypothetical protein; InterPro IPR005829; KEGG: cpi:Cpin_3623 outer membrane adhesin like protein; SPTR: VCBS.
  
     0.501
Lbys_2442
KEGG: phe:Phep_0952 tetratricopeptide domain protein; SPTR: Tetratricopeptide domain protein; PFAM: SusD family.
  
     0.491
Lbys_0482
KEGG: bth:BT_4753 hypothetical protein; SPTR: Putative uncharacterized protein.
     
 0.488
Lbys_2889
Phospholipase C, phosphocholine-specific; COGs: COG3511 Phospholipase C; InterPro IPR007312:IPR017909:IPR006311:IPR017767; KEGG: dfe:Dfer_1225 phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; PRIAM: Phospholipase C; SPTR: Phospholipase C, phosphocholine-specific; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: Phosphoesterase family; TIGRFAM: phospholipase C, phosphocholine-specific, Pseudomonas-type; Tat (twin-arginine translocation) pathway signal sequence.
  
     0.486
Lbys_2441
TonB-dependent receptor plug; InterPro IPR012910:IPR000531; KEGG: phe:Phep_0950 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
  
     0.469
Lbys_1986
TonB-dependent receptor plug; InterPro IPR012910:IPR000531; KEGG: phe:Phep_0950 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
  
     0.461
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.