Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Lbys_0482KEGG: bth:BT_4753 hypothetical protein; SPTR: Putative uncharacterized protein. (73 aa)    
Predicted Functional Partners:
Lbys_0483
KEGG: afu:AF1804 hypothetical protein; SPTR: S-adenosylmethionine decarboxylase proenzyme.
       0.561
Lbys_0484
InterPro IPR007627:IPR007630:IPR014284; KEGG: zpr:ZPR_4420 RNA polymerase ECF-type sigma factor; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
       0.561
Lbys_0485
KEGG: zpr:ZPR_4419 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: transposase, IS605 OrfB family, central region.
       0.561
Lbys_0481
Hypothetical protein; InterPro IPR001387; KEGG: fjo:Fjoh_4999 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix.
     
 0.480
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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