STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0484InterPro IPR007627:IPR007630:IPR014284; KEGG: zpr:ZPR_4420 RNA polymerase ECF-type sigma factor; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (270 aa)    
Predicted Functional Partners:
Lbys_0483
KEGG: afu:AF1804 hypothetical protein; SPTR: S-adenosylmethionine decarboxylase proenzyme.
       0.773
Lbys_0485
KEGG: zpr:ZPR_4419 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: transposase, IS605 OrfB family, central region.
       0.773
Lbys_0482
KEGG: bth:BT_4753 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.561
Lbys_0487
RagB/SusD domain protein; InterPro IPR012944; KEGG: bfr:BF0671 hypothetical protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
   
   0.467
Lbys_0486
TonB-dependent receptor plug; InterPro IPR012910:IPR000531; KEGG: bfs:BF0596 putative surface membrane protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
       0.419
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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