Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lbys_0488InterPro IPR018550; KEGG: gfo:GFO_0335 secreted protein; PFAM: Lipid A 3-O-deacylase-related; SPTR: Putative uncharacterized protein; PFAM: Lipid A 3-O-deacylase (PagL). (363 aa)    
Predicted Functional Partners:
Lbys_0490
KEGG: geo:Geob_2303 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein.
 
     0.931
Lbys_0489
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: rmr:Rmar_2738 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Group 1 glycosyl transferase; PFAM: Glycosyl transferases group 1.
 
     0.906
Lbys_1292
COGs: COG0642 Signal transduction histidine kinase; InterProIPR013767:IPR003018:IPR003661:IPR003594:IPR 001789:IPR008207:IPR005467:IPR000014:IPR000700:IPR001610:I PR004358; KEGG: dfe:Dfer_5761 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; GAF domain protein; response regulator receiver; Hpt domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; GAF domai [...]
  
  
 0.837
Lbys_0082
KEGG: sli:Slin_0566 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
 0.821
Lbys_2176
KEGG: sli:Slin_5949 hypothetical protein; SPTR: Fjo24; PFAM: Peptidase family C25.
  
  
 0.821
Lbys_2711
KEGG: sli:Slin_0229 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
 0.821
Lbys_0491
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: rmr:Rmar_2737 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Possible group 1 glycosyl transferase; PFAM: Glycosyl transferases group 1.
 
     0.819
Lbys_0492
KEGG: dfe:Dfer_2554 hypothetical protein; SPTR: Outer membrane protein.
 
     0.805
Lbys_0503
COGs: COG0642 Signal transduction histidine kinase; InterProIPR005467:IPR001789:IPR000014:IPR000700:IPR 008207:IPR003018:IPR013767:IPR013655:IPR013656:IPR003661:I PR003594:IPR001610:IPR004358; KEGG: fba:FIC_01779 PAS/PAC domain protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS fold domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containin [...]
  
  
 0.803
Lbys_0493
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_2555 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family.
       0.773
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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