STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0490KEGG: geo:Geob_2303 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein. (310 aa)    
Predicted Functional Partners:
Lbys_0488
InterPro IPR018550; KEGG: gfo:GFO_0335 secreted protein; PFAM: Lipid A 3-O-deacylase-related; SPTR: Putative uncharacterized protein; PFAM: Lipid A 3-O-deacylase (PagL).
 
     0.931
Lbys_0489
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: rmr:Rmar_2738 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Group 1 glycosyl transferase; PFAM: Glycosyl transferases group 1.
 
    0.903
Lbys_0491
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: rmr:Rmar_2737 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Possible group 1 glycosyl transferase; PFAM: Glycosyl transferases group 1.
 
    0.845
Lbys_0492
KEGG: dfe:Dfer_2554 hypothetical protein; SPTR: Outer membrane protein.
 
     0.837
Lbys_0493
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_2555 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family.
 
     0.820
Lbys_0494
Hypothetical protein; InterPro IPR000182; KEGG: dfe:Dfer_2556 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.819
Lbys_0495
Serine palmitoyltransferase; COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR001917:IPR004839; KEGG: dfe:Dfer_2557 glycine C-acetyltransferase; PFAM: aminotransferase class I and II; PRIAM: Glycine C-acetyltransferase; SPTR: Glycine C-acetyltransferase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase.
 
     0.800
Lbys_1414
KEGG: cpi:Cpin_6195 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.577
Lbys_2067
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: gau:GAU_3808 putative outer membrane protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Putative outer membrane protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
  
     0.522
Lbys_3265
Protein of unknown function DUF1680; COGs: COG3533 conserved hypothetical protein; InterPro IPR006558:IPR019775:IPR011081:IPR012878; KEGG: cpi:Cpin_4617 protein of unknown function DUF1680; PFAM: protein of unknown function DUF1680; Ig domain protein; SMART: LamG domain protein jellyroll fold domain protein; SPTR: Putative uncharacterized protein; PFAM: Putative glycosyl hydrolase of unknown function (DUF1680); Bacterial Ig-like domain (group 4).
  
     0.468
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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