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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0502KEGG: dfe:Dfer_3212 hypothetical protein; SPTR: Putative uncharacterized protein. (404 aa)    
Predicted Functional Partners:
Lbys_0503
COGs: COG0642 Signal transduction histidine kinase; InterProIPR005467:IPR001789:IPR000014:IPR000700:IPR 008207:IPR003018:IPR013767:IPR013655:IPR013656:IPR003661:I PR003594:IPR001610:IPR004358; KEGG: fba:FIC_01779 PAS/PAC domain protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS fold domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containin [...]
       0.524
Lbys_0504
COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: fba:FIC_01778 two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Two-component response regulator; PFAM: Response regulator receiver domain.
       0.524
Lbys_0505
KEGG: fba:FIC_01777 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.524
Lbys_0506
Sulfatase; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173:IPR000917; KEGG: fba:FIC_01776 glycosyl transferase, family 2; PFAM: sulfatase; glycosyl transferase family 2; SPTR: Glycosyl transferase family protein; PFAM: Sulfatase; Glycosyl transferase family 2; Chitin synthase.
       0.524
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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