STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0516YceI family protein; COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: dfe:Dfer_0371 YceI family protein; PFAM: YceI family protein; SPTR: YceI family protein; PFAM: YceI-like domain; Belongs to the UPF0312 family. (196 aa)    
Predicted Functional Partners:
Lbys_0517
KEGG: pgn:PGN_1476 hypothetical protein; SPTR: Thermostable beta-glucosidase B (Gentiobiase)(Cellobiase) (Beta-D-glucoside glucohydrolase).
       0.523
Lbys_0293
Cupin 2 conserved barrel domain protein; COGs: COG1917 conserved hypothetical protein contains double-stranded beta-helix domain; InterPro IPR013096; KEGG: cpi:Cpin_3791 cupin 2 conserved barrel domain protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Cupin 2 conserved barrel domain protein; PFAM: Cupin domain.
 
     0.485
Lbys_0285
InterPro IPR013096; KEGG: dfe:Dfer_1447 cupin 2 conserved barrel domain protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Cupin 2 conserved barrel domain protein; PFAM: Cupin domain.
  
     0.446
Lbys_2187
KEGG: dfe:Dfer_3474 quinol:cytochrome c oxidoreductase membrane protein; SPTR: Quinol:cytochrome c oxidoreductase membrane protein; PFAM: Protein of unknown function (DUF3341).
  
     0.426
Lbys_2189
Quinol:cytochrome c oxidoreductase quinone-binding subunit 2; KEGG: sli:Slin_5669 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.426
Lbys_2185
Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR017871:IPR017896; KEGG: dfe:Dfer_3476 molybdopterin oxidoreductase, iron-sulfur binding subunit; SPTR: Molybdopterin oxidoreductase, iron-sulfur binding subunit; PFAM: Molydopterin dinucleotide binding domain.
  
     0.406
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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