Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Lbys_0551KEGG: bvu:BVU_4190 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated. (103 aa)    
Predicted Functional Partners:
Lbys_0549
Cation efflux protein; COGs: COG1230 Co/Zn/Cd efflux system component; InterPro IPR006121:IPR002524; KEGG: prw:PsycPRwf_0699 cation efflux protein; PFAM: cation efflux protein; SPTR: Cation efflux protein; PFAM: Cation efflux family.
       0.580
Lbys_0550
TonB-dependent receptor plug; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910; KEGG: bvu:BVU_4189 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor plug; SPTR: TonB-dependent outer membrane receptor; PFAM: TonB-dependent Receptor Plug Domain.
       0.548
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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