close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0571InterPro IPR019887; KEGG: mmw:Mmwyl1_0222 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SPTR: Putative transcriptional regulator, AsnC family; PFAM: AsnC family. (91 aa)    
Predicted Functional Partners:
Lbys_0570
rRNA (guanine-N(2)-)-methyltransferase; COGs: COG0116 N6-adenine-specific DNA methylase; InterPro IPR004114:IPR002052:IPR000241; KEGG: fjo:Fjoh_2495 putative RNA methylase; PFAM: RNA methylase; THUMP domain-containing protein; PRIAM: rRNA (guanine-N(2)-)-methyltransferase; SPTR: Putative RNA methylase; PFAM: Putative RNA methylase family UPF0020; THUMP domain; Belongs to the methyltransferase superfamily.
       0.773
ung
Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
       0.737
Lbys_0567
O-methyltransferase-like protein; COGs: COG4122 O-methyltransferase; KEGG: cpi:Cpin_6507 O-methyltransferase-like protein; SPTR: O-methyltransferase-like protein; PFAM: O-methyltransferase.
       0.526
Lbys_0568
ApaG domain protein; COGs: COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport; InterPro IPR007474; KEGG: sli:Slin_0247 ApaG domain protein; PFAM: ApaG domain protein; SPTR: ApaG domain protein; PFAM: Protein of unknown function (DUF525).
       0.526
aspS
aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
  
     0.496
Lbys_1543
Glutamate synthase (NADH) large subunit; COGs: COG0069 Glutamate synthase domain 2; InterProIPR000583:IPR006982:IPR002932:IPR002489:IPR 017932; KEGG: dfe:Dfer_5479 glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein; PRIAM: Glutamate synthase (ferredoxin); SPTR: Glutamate synthase (Ferredoxin); PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.
     
 0.404
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.