node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lbys_0322 | Lbys_0560 | Lbys_0322 | Lbys_0560 | KEGG: enc:ECL_03598 hypothetical protein; SPTR: Putative uncharacterized protein. | AAA ATPase central domain protein; COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003959:IPR003593; KEGG: cpi:Cpin_2822 AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: ATPase central domain protein; PFAM: ATPase family associated with various cellular activities (AAA). | 0.401 |
Lbys_0322 | Lbys_2252 | Lbys_0322 | Lbys_2252 | KEGG: enc:ECL_03598 hypothetical protein; SPTR: Putative uncharacterized protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.726 |
Lbys_0322 | Lbys_2587 | Lbys_0322 | Lbys_2587 | KEGG: enc:ECL_03598 hypothetical protein; SPTR: Putative uncharacterized protein. | 3'-5' exonuclease, PolB; InterPro IPR019288; KEGG: dfe:Dfer_3714 hypothetical protein; PFAM: 3'-5' exonuclease, PolB-like; SPTR: Putative uncharacterized protein; PFAM: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB. | 0.596 |
Lbys_0322 | dinB | Lbys_0322 | Lbys_0582 | KEGG: enc:ECL_03598 hypothetical protein; SPTR: Putative uncharacterized protein. | DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.573 |
Lbys_0322 | polA | Lbys_0322 | Lbys_0657 | KEGG: enc:ECL_03598 hypothetical protein; SPTR: Putative uncharacterized protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.984 |
Lbys_0560 | Lbys_0322 | Lbys_0560 | Lbys_0322 | AAA ATPase central domain protein; COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003959:IPR003593; KEGG: cpi:Cpin_2822 AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: ATPase central domain protein; PFAM: ATPase family associated with various cellular activities (AAA). | KEGG: enc:ECL_03598 hypothetical protein; SPTR: Putative uncharacterized protein. | 0.401 |
Lbys_0560 | Lbys_2252 | Lbys_0560 | Lbys_2252 | AAA ATPase central domain protein; COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003959:IPR003593; KEGG: cpi:Cpin_2822 AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: ATPase central domain protein; PFAM: ATPase family associated with various cellular activities (AAA). | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.708 |
Lbys_0560 | dinB | Lbys_0560 | Lbys_0582 | AAA ATPase central domain protein; COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003959:IPR003593; KEGG: cpi:Cpin_2822 AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: ATPase central domain protein; PFAM: ATPase family associated with various cellular activities (AAA). | DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.636 |
Lbys_0560 | recA | Lbys_0560 | Lbys_0094 | AAA ATPase central domain protein; COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003959:IPR003593; KEGG: cpi:Cpin_2822 AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: ATPase central domain protein; PFAM: ATPase family associated with various cellular activities (AAA). | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.401 |
Lbys_0580 | Lbys_0583 | Lbys_0580 | Lbys_0583 | COGs: COG0587 DNA polymerase III alpha subunit; InterPro IPR004013:IPR011708:IPR003141:IPR004805; KEGG: fjo:Fjoh_3769 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; PRIAM: DNA-directed DNA polymerase; SMART: phosphoesterase PHP domain protein; SPTR: DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; TIGRFAM: DNA-directed DNA polymerase III (polc). | Helix-turn-helix domain protein; InterPro IPR001387; KEGG: fba:FIC_01142 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix. | 0.765 |
Lbys_0580 | Lbys_2252 | Lbys_0580 | Lbys_2252 | COGs: COG0587 DNA polymerase III alpha subunit; InterPro IPR004013:IPR011708:IPR003141:IPR004805; KEGG: fjo:Fjoh_3769 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; PRIAM: DNA-directed DNA polymerase; SMART: phosphoesterase PHP domain protein; SPTR: DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; TIGRFAM: DNA-directed DNA polymerase III (polc). | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.911 |
Lbys_0580 | dinB | Lbys_0580 | Lbys_0582 | COGs: COG0587 DNA polymerase III alpha subunit; InterPro IPR004013:IPR011708:IPR003141:IPR004805; KEGG: fjo:Fjoh_3769 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; PRIAM: DNA-directed DNA polymerase; SMART: phosphoesterase PHP domain protein; SPTR: DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; TIGRFAM: DNA-directed DNA polymerase III (polc). | DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.908 |
Lbys_0580 | polA | Lbys_0580 | Lbys_0657 | COGs: COG0587 DNA polymerase III alpha subunit; InterPro IPR004013:IPR011708:IPR003141:IPR004805; KEGG: fjo:Fjoh_3769 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; PRIAM: DNA-directed DNA polymerase; SMART: phosphoesterase PHP domain protein; SPTR: DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; TIGRFAM: DNA-directed DNA polymerase III (polc). | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.511 |
Lbys_0581 | Lbys_0583 | Lbys_0581 | Lbys_0583 | Hypothetical protein. | Helix-turn-helix domain protein; InterPro IPR001387; KEGG: fba:FIC_01142 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix. | 0.554 |
Lbys_0581 | dinB | Lbys_0581 | Lbys_0582 | Hypothetical protein. | DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.773 |
Lbys_0583 | Lbys_0580 | Lbys_0583 | Lbys_0580 | Helix-turn-helix domain protein; InterPro IPR001387; KEGG: fba:FIC_01142 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix. | COGs: COG0587 DNA polymerase III alpha subunit; InterPro IPR004013:IPR011708:IPR003141:IPR004805; KEGG: fjo:Fjoh_3769 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; PRIAM: DNA-directed DNA polymerase; SMART: phosphoesterase PHP domain protein; SPTR: DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; TIGRFAM: DNA-directed DNA polymerase III (polc). | 0.765 |
Lbys_0583 | Lbys_0581 | Lbys_0583 | Lbys_0581 | Helix-turn-helix domain protein; InterPro IPR001387; KEGG: fba:FIC_01142 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix. | Hypothetical protein. | 0.554 |
Lbys_0583 | dinB | Lbys_0583 | Lbys_0582 | Helix-turn-helix domain protein; InterPro IPR001387; KEGG: fba:FIC_01142 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix. | DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.863 |
Lbys_0583 | recA | Lbys_0583 | Lbys_0094 | Helix-turn-helix domain protein; InterPro IPR001387; KEGG: fba:FIC_01142 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.408 |
Lbys_2252 | Lbys_0322 | Lbys_2252 | Lbys_0322 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: enc:ECL_03598 hypothetical protein; SPTR: Putative uncharacterized protein. | 0.726 |